OmnipathR

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see OmnipathR.

Import Omnipath network

Bioconductor version: 3.10

Import data from https://www.omnipathdb.org webservice. It also includes functions to transform and print this data.

Author: Attila Gabor, Denes Turei, Alberto Valdeolivas

Maintainer: Alberto Valdeolivas Urbelz <alvaldeolivas at gmail.com>

Citation (from within R, enter citation("OmnipathR")):

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OmnipathR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OmnipathR")

OmnipathR: utility functions to work with Omnipath in R	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

biocViews	DataImport, DataRepresentation, GraphAndNetwork, Network, Pathways, Software, ThirdPartyClient
Version	1.0.1
In Bioconductor since	BioC 3.10 (R-3.6) (4.5 years)
License	MIT + file LICENSE
Depends	igraph, graphics, methods, utils
Imports	dplyr, rlang
System Requirements
URL	https://github.com/saezlab/OmnipathR

Suggests	tidyr, dnet, gprofiler2, BiocStyle, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	OmnipathR_1.0.1.tar.gz
Windows Binary	OmnipathR_1.0.1.zip
Mac OS X 10.11 (El Capitan)	OmnipathR_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OmnipathR
Source Repository (Developer Access)	git clone [email protected]:packages/OmnipathR
Bioc Package Browser	https://code.bioconductor.org/browse/OmnipathR/
Package Short Url	https://bioconductor.org/packages/OmnipathR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.10	Source Archive