MSstatsTMT
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see MSstatsTMT.
Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
Bioconductor version: 3.10
Tools for protein significance analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling.
Author: Ting Huang [aut, cre], Meena Choi [aut], Sicheng Hao [aut], Olga Vitek [aut]
Maintainer: Ting Huang <thuang0703 at gmail.com>
citation("MSstatsTMT")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsTMT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstatsTMT")
MSstatsTMT User Guide | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software |
Version | 1.4.6 |
In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.6) |
Imports | limma, lme4, lmerTest, dplyr, tidyr, statmod, methods, reshape2, data.table, matrixStats, stats, utils, ggplot2, grDevices, graphics, MSstats |
System Requirements | |
URL | http://msstats.org/msstatstmt/ |
Bug Reports | https://groups.google.com/forum/#!forum/msstats |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MSstatsTMT_1.4.6.tar.gz |
Windows Binary | MSstatsTMT_1.4.6.zip |
Mac OS X 10.11 (El Capitan) | MSstatsTMT_1.4.6.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MSstatsTMT |
Source Repository (Developer Access) | git clone [email protected]:packages/MSstatsTMT |
Bioc Package Browser | https://code.bioconductor.org/browse/MSstatsTMT/ |
Package Short Url | https://bioconductor.org/packages/MSstatsTMT/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.10 | Source Archive |