LinkHD
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see LinkHD.
LinkHD: a versatile framework to explore and integrate heterogeneous data
Bioconductor version: 3.10
Here we present Link-HD, an approach to integrate heterogeneous datasets, as a generalization of STATIS-ACT (“Structuration des Tableaux A Trois Indices de la Statistique–Analyse Conjointe de Tableaux”), a family of methods to join and compare information from multiple subspaces. However, STATIS-ACT has some drawbacks since it only allows continuous data and it is unable to establish relationships between samples and features. In order to tackle these constraints, we incorporate multiple distance options and a linear regression based Biplot model in order to stablish relationships between observations and variable and perform variable selection.
Author: Laura M. Zingaretti [aut, cre]
Maintainer: "Laura M Zingaretti" <m.lau.zingaretti at gmail.com>
citation("LinkHD")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LinkHD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LinkHD")| Annotating Genomic Variants | HTML | R Script |
| Reference Manual |
Details
| biocViews | Classification, MultipleComparison, Regression, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6.0), methods, ggplot2, stats |
| Imports | scales, cluster, graphics, ggpubr, gridExtra, vegan, rio, MultiAssayExperiment, emmeans, reshape2, data.table |
| System Requirements | |
| URL |
See More
| Suggests | MASS (>= 7.3.0), knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LinkHD_1.0.0.tar.gz |
| Windows Binary | LinkHD_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | LinkHD_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/LinkHD |
| Source Repository (Developer Access) | git clone [email protected]:packages/LinkHD |
| Bioc Package Browser | https://code.bioconductor.org/browse/LinkHD/ |
| Package Short Url | https://bioconductor.org/packages/LinkHD/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |