BiocWorkflowTools
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see BiocWorkflowTools.
Tools to aid the development of Bioconductor Workflow packages
Bioconductor version: 3.10
Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow.
Author: Mike Smith [aut, cre], Andrzej OleÅ› [aut]
Maintainer: Mike Smith <grimbough at gmail.com>
Citation (from within R, enter
citation("BiocWorkflowTools")
):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocWorkflowTools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocWorkflowTools")
Converting Rmarkdown to F1000Research LaTeX Format | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ReportWriting, Software |
Version | 1.12.1 |
In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.4) |
Imports | BiocStyle, bookdown, git2r, httr, knitr, rmarkdown, rstudioapi, stringr, tools, utils, usethis |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | BiocMetaWorkflow, CAGEWorkflow, recountWorkflow, SingscoreAMLMutations |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BiocWorkflowTools_1.12.1.tar.gz |
Windows Binary | BiocWorkflowTools_1.12.1.zip |
Mac OS X 10.11 (El Capitan) | BiocWorkflowTools_1.12.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BiocWorkflowTools |
Source Repository (Developer Access) | git clone [email protected]:packages/BiocWorkflowTools |
Bioc Package Browser | https://code.bioconductor.org/browse/BiocWorkflowTools/ |
Package Short Url | https://bioconductor.org/packages/BiocWorkflowTools/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.10 | Source Archive |